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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10015308m | ||||||||
Common Name | EUTSA_v10015308mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | ARR-B | ||||||||
Protein Properties | Length: 219aa MW: 24770.6 Da PI: 6.7213 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 77.8 | 1.4e-24 | 170 | 218 | 1 | 50 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHL 50 kpr+ WtpeLH++Fv aveqL G+ekA+Pk+il++m+++gLt+++v+SHL Thhalv10015308m 170 KPRVPWTPELHQKFVTAVEQL-GIEKAVPKKILDIMNIEGLTRADVASHL 218 79*******************.***************************9 PP | |||||||
2 | Response_reg | 62.2 | 2.6e-21 | 3 | 110 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 vl vdD+p+ +e lr ++ +y +v++++++++ale+l++k+ +Dl++ D em + dG++ll+ +++lp+i++++h++ + + + + Thhalv10015308m 3 VLAVDDNPTYLEKLRDLMLLCKY-HVTTTTESKKALEMLRDKRnmFDLVIADAEMLETDGFKLLEI--GLDMNLPVIMMSSHNDYDSVMKGVTH 93 799********************.***************999999******************985..44578********************* PP TESEEEESS--HHHHHH CS Response_reg 93 GakdflsKpfdpeelvk 109 Ga d+l+Kp+ +el+ Thhalv10015308m 94 GACDYLVKPVGLKELRS 110 ************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 5.98E-27 | 1 | 117 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.0E-20 | 1 | 112 | IPR001789 | Signal transduction response regulator, receiver domain |
Gene3D | G3DSA:3.40.50.2300 | 5.8E-31 | 1 | 140 | No hit | No description |
PROSITE profile | PS50110 | 35.157 | 2 | 116 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 7.1E-19 | 3 | 110 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.23E-20 | 4 | 115 | No hit | No description |
SuperFamily | SSF46689 | 8.33E-15 | 168 | 218 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 169 | 218 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.3E-21 | 170 | 218 | IPR006447 | Myb domain, plants |
PROSITE profile | PS51294 | 11.601 | 170 | 219 | IPR017930 | Myb domain |
Pfam | PF00249 | 5.2E-7 | 172 | 218 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MRVLAVDDNP TYLEKLRDLM LLCKYHVTTT TESKKALEML RDKRNMFDLV IADAEMLETD 60 GFKLLEIGLD MNLPVIMMSS HNDYDSVMKG VTHGACDYLV KPVGLKELRS IWQHVVKKNI 120 NKFAKSIGPS DSQLSQSISN NQKDKVSDSD REKKDGEGSE HNVQEPCSLK PRVPWTPELH 180 QKFVTAVEQL GIEKAVPKKI LDIMNIEGLT RADVASHLH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 6e-18 | 170 | 218 | 5 | 53 | ARR10-B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006401130.1 | 1e-163 | hypothetical protein EUTSA_v10015308mg, partial | ||||
Swissprot | Q9FGT7 | 1e-91 | ARR18_ARATH; Two-component response regulator ARR18 | ||||
TrEMBL | V4LRV0 | 1e-163 | V4LRV0_EUTSA; Uncharacterized protein (Fragment) | ||||
STRING | AT5G58080.1 | 2e-89 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM27191 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58080.1 | 4e-93 | response regulator 18 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10015308m |
Entrez Gene | 18016497 |